Details of (2,2,) -related L-R pairs

(2,2,:) Pattern

(2,2,) -related L-R pairs (Top31 pairs)

library("scTensor")
load("reanalysis.RData")

col <- .setColor("many")[2]
scTensor:::.myvisNetwork(g, col)

Rank	Ligand Gene	Receptor Gene	Ligand Expression (Log10(exp + 1))	Receptor Expression (Log10(exp + 1))	LR-pair factor value (Percentage)	P-value (Grubbs test)	Q-value (BH method)	PubMed
1	ANGPT2 Description: angiopoietin 2 GO: 1-29 Reactome: 1-3 UniProtKB: 1-1 STRING: RefEx: ANGPT2 Expression Atlas: ANGPT2 Single Cell Expression Atlas: ANGPT2 scRNASeqDB: ANGPT2 PanglaoDB: ANGPT2 CMap: ANGPT2 MeSH: 1-94 95-188 189-282 283-376 377-470 471-564 565-658 659-752 753-846 847-940 941-1034 1035-1128 1129-1222 1223-1312	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.307 (5.018%)	0.011	0.04	1-71
2	BGN Description: biglycan GO: 1-21 Reactome: 1-20 UniProtKB: 1-2 STRING: RefEx: BGN Expression Atlas: BGN Single Cell Expression Atlas: BGN scRNASeqDB: BGN PanglaoDB: BGN CMap: BGN MeSH: 1-97 98-194 195-291 292-388 389-485 486-582 583-679 680-773	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.263 (4.307%)	0.02	0.065	1-71
3	ISLR Description: immunoglobulin superfamily containing leucine rich repeat GO: 1-5 Reactome: 1-4 UniProtKB: 1-2 STRING: RefEx: ISLR Expression Atlas: ISLR Single Cell Expression Atlas: ISLR scRNASeqDB: ISLR PanglaoDB: ISLR CMap: ISLR MeSH: 1-54 55-107	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.263 (4.301%)	0	0	1-63
4	DCN Description: decorin GO: 1-35 Reactome: 1-21 UniProtKB: 1-3 STRING: RefEx: DCN Expression Atlas: DCN Single Cell Expression Atlas: DCN scRNASeqDB: DCN PanglaoDB: DCN CMap: DCN MeSH: 1-97 98-194 195-291 292-388 389-485 486-582 583-679 680-776 777-873 874-961	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.258 (4.214%)	0	0	1-67
5	COL1A1 Description: collagen type I alpha 1 chain GO: 1-64 Reactome: 1-37 UniProtKB: 1-1 STRING: RefEx: COL1A1 Expression Atlas: COL1A1 Single Cell Expression Atlas: COL1A1 scRNASeqDB: COL1A1 PanglaoDB: COL1A1 CMap: COL1A1 MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1274 1275-1372 1373-1470 1471-1568 1569-1666 1667-1753	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.245 (4.002%)	0.068	0.162	1-81 82-161
6	COL3A1 Description: collagen type III alpha 1 chain GO: 1-37 Reactome: 1-27 UniProtKB: 1-1 STRING: RefEx: COL3A1 Expression Atlas: COL3A1 Single Cell Expression Atlas: COL3A1 scRNASeqDB: COL3A1 PanglaoDB: COL3A1 CMap: COL3A1 MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1076	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.237 (3.88%)	0	0.001	1-61 62-122
7	LUM Description: lumican GO: 1-22 Reactome: 1-15 UniProtKB: 1-1 STRING: 1 RefEx: LUM Expression Atlas: LUM Single Cell Expression Atlas: LUM scRNASeqDB: LUM PanglaoDB: LUM CMap: LUM MeSH: 1-88 89-176 177-264 265-352 353-440 441-528	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.217 (3.544%)	0.029	0.088	1-68
8	ANGPT2 Description: angiopoietin 2 GO: 1-29 Reactome: 1-3 UniProtKB: 1-1 STRING: RefEx: ANGPT2 Expression Atlas: ANGPT2 Single Cell Expression Atlas: ANGPT2 scRNASeqDB: ANGPT2 PanglaoDB: ANGPT2 CMap: ANGPT2 MeSH: 1-94 95-188 189-282 283-376 377-470 471-564 565-658 659-752 753-846 847-940 941-1034 1035-1128 1129-1222 1223-1312	PDGFRA Description: platelet derived growth factor receptor alpha GO: 1-72 Reactome: 1-18 UniProtKB: 1-1 STRING: RefEx: PDGFRA Expression Atlas: PDGFRA Single Cell Expression Atlas: PDGFRA scRNASeqDB: PDGFRA PanglaoDB: PDGFRA CMap: PDGFRA MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1267			0.208 (3.402%)	0.131	0.256	1-52
9	SPARCL1 Description: SPARC like 1 GO: 1-13 Reactome: 1-4 UniProtKB: 1-4 STRING: RefEx: SPARCL1 Expression Atlas: SPARCL1 Single Cell Expression Atlas: SPARCL1 scRNASeqDB: SPARCL1 PanglaoDB: SPARCL1 CMap: SPARCL1 MeSH: 1-93 94-186 187-279 280-369	NTRK2 Description: neurotrophic receptor tyrosine kinase 2 GO: 1-67 Reactome: 1-17 UniProtKB: 1-4 STRING: RefEx: NTRK2 Expression Atlas: NTRK2 Single Cell Expression Atlas: NTRK2 scRNASeqDB: NTRK2 PanglaoDB: NTRK2 CMap: NTRK2 MeSH: 1-94 95-188 189-282 283-376 377-470 471-564 565-658 659-752 753-846 847-940 941-1034 1035-1127			0.176 (2.874%)	0.094	0.207	1-22
10	DCN Description: decorin GO: 1-35 Reactome: 1-21 UniProtKB: 1-3 STRING: RefEx: DCN Expression Atlas: DCN Single Cell Expression Atlas: DCN scRNASeqDB: DCN PanglaoDB: DCN CMap: DCN MeSH: 1-97 98-194 195-291 292-388 389-485 486-582 583-679 680-776 777-873 874-961	PDGFRA Description: platelet derived growth factor receptor alpha GO: 1-72 Reactome: 1-18 UniProtKB: 1-1 STRING: RefEx: PDGFRA Expression Atlas: PDGFRA Single Cell Expression Atlas: PDGFRA scRNASeqDB: PDGFRA PanglaoDB: PDGFRA CMap: PDGFRA MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1267			0.175 (2.857%)	0.808	0.998	1-49
11	IGF1 Description: insulin like growth factor 1 GO: 1-82 Reactome: 1-14 UniProtKB: 1-4 STRING: RefEx: IGF1 Expression Atlas: IGF1 Single Cell Expression Atlas: IGF1 scRNASeqDB: IGF1 PanglaoDB: IGF1 CMap: IGF1 MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1274 1275-1372 1373-1470 1471-1568 1569-1666 1667-1764 1765-1862 1863-1960 1961-2058 2059-2156 2157-2254 2255-2352 2353-2450 2451-2548 2549-2646 2647-2744 2745-2842 2843-2940 2941-3038 3039-3136 3137-3226	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.174 (2.849%)	0.025	0.079	1-84
12	COL1A1 Description: collagen type I alpha 1 chain GO: 1-64 Reactome: 1-37 UniProtKB: 1-1 STRING: RefEx: COL1A1 Expression Atlas: COL1A1 Single Cell Expression Atlas: COL1A1 scRNASeqDB: COL1A1 PanglaoDB: COL1A1 CMap: COL1A1 MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1274 1275-1372 1373-1470 1471-1568 1569-1666 1667-1753	PDGFRA Description: platelet derived growth factor receptor alpha GO: 1-72 Reactome: 1-18 UniProtKB: 1-1 STRING: RefEx: PDGFRA Expression Atlas: PDGFRA Single Cell Expression Atlas: PDGFRA scRNASeqDB: PDGFRA PanglaoDB: PDGFRA CMap: PDGFRA MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1267			0.166 (2.713%)	1	1	1-72 73-143
13	ANGPT2 Description: angiopoietin 2 GO: 1-29 Reactome: 1-3 UniProtKB: 1-1 STRING: RefEx: ANGPT2 Expression Atlas: ANGPT2 Single Cell Expression Atlas: ANGPT2 scRNASeqDB: ANGPT2 PanglaoDB: ANGPT2 CMap: ANGPT2 MeSH: 1-94 95-188 189-282 283-376 377-470 471-564 565-658 659-752 753-846 847-940 941-1034 1035-1128 1129-1222 1223-1312	NTRK2 Description: neurotrophic receptor tyrosine kinase 2 GO: 1-67 Reactome: 1-17 UniProtKB: 1-4 STRING: RefEx: NTRK2 Expression Atlas: NTRK2 Single Cell Expression Atlas: NTRK2 scRNASeqDB: NTRK2 PanglaoDB: NTRK2 CMap: NTRK2 MeSH: 1-94 95-188 189-282 283-376 377-470 471-564 565-658 659-752 753-846 847-940 941-1034 1035-1127			0.165 (2.69%)	0.78	0.993	1-29
14	COL3A1 Description: collagen type III alpha 1 chain GO: 1-37 Reactome: 1-27 UniProtKB: 1-1 STRING: RefEx: COL3A1 Expression Atlas: COL3A1 Single Cell Expression Atlas: COL3A1 scRNASeqDB: COL3A1 PanglaoDB: COL3A1 CMap: COL3A1 MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1076	PDGFRA Description: platelet derived growth factor receptor alpha GO: 1-72 Reactome: 1-18 UniProtKB: 1-1 STRING: RefEx: PDGFRA Expression Atlas: PDGFRA Single Cell Expression Atlas: PDGFRA scRNASeqDB: PDGFRA PanglaoDB: PDGFRA CMap: PDGFRA MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1267			0.161 (2.631%)	0.619	0.825	1-52 53-103
15	IGFBP7 Description: insulin like growth factor binding protein 7 GO: 1-19 Reactome: 1-8 UniProtKB: 1-1 STRING: RefEx: IGFBP7 Expression Atlas: IGFBP7 Single Cell Expression Atlas: IGFBP7 scRNASeqDB: IGFBP7 PanglaoDB: IGFBP7 CMap: IGFBP7 MeSH: 1-93 94-186 187-279 280-372 373-465 466-558 559-648	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.16 (2.619%)	0.19	0.355	1-69
16	LUM Description: lumican GO: 1-22 Reactome: 1-15 UniProtKB: 1-1 STRING: 1 RefEx: LUM Expression Atlas: LUM Single Cell Expression Atlas: LUM scRNASeqDB: LUM PanglaoDB: LUM CMap: LUM MeSH: 1-88 89-176 177-264 265-352 353-440 441-528	PDGFRA Description: platelet derived growth factor receptor alpha GO: 1-72 Reactome: 1-18 UniProtKB: 1-1 STRING: RefEx: PDGFRA Expression Atlas: PDGFRA Single Cell Expression Atlas: PDGFRA scRNASeqDB: PDGFRA PanglaoDB: PDGFRA CMap: PDGFRA MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1267			0.147 (2.402%)	0	0	1-49
17	ANGPT2 Description: angiopoietin 2 GO: 1-29 Reactome: 1-3 UniProtKB: 1-1 STRING: RefEx: ANGPT2 Expression Atlas: ANGPT2 Single Cell Expression Atlas: ANGPT2 scRNASeqDB: ANGPT2 PanglaoDB: ANGPT2 CMap: ANGPT2 MeSH: 1-94 95-188 189-282 283-376 377-470 471-564 565-658 659-752 753-846 847-940 941-1034 1035-1128 1129-1222 1223-1312	ENG Description: endoglin GO: 1-59 Reactome: UniProtKB: 1-6 STRING: RefEx: ENG Expression Atlas: ENG Single Cell Expression Atlas: ENG scRNASeqDB: ENG PanglaoDB: ENG CMap: ENG MeSH: 1-100 101-200 201-300 301-400 401-500 501-600 601-700 701-800 801-900 901-1000 1001-1100 1101-1200 1201-1300 1301-1400 1401-1500 1501-1600 1601-1700 1701-1787			0.137 (2.237%)	1	1	1-36
18	INHBA Description: inhibin subunit beta A GO: 1-64 Reactome: 1-8 UniProtKB: 1-2 STRING: RefEx: INHBA Expression Atlas: INHBA Single Cell Expression Atlas: INHBA scRNASeqDB: INHBA PanglaoDB: INHBA CMap: INHBA MeSH: 1-94 95-188 189-282 283-376 377-470 471-564 565-658 659-752 753-846 847-940 941-1034 1035-1128 1129-1222 1223-1308	ENG Description: endoglin GO: 1-59 Reactome: UniProtKB: 1-6 STRING: RefEx: ENG Expression Atlas: ENG Single Cell Expression Atlas: ENG scRNASeqDB: ENG PanglaoDB: ENG CMap: ENG MeSH: 1-100 101-200 201-300 301-400 401-500 501-600 601-700 701-800 801-900 901-1000 1001-1100 1101-1200 1201-1300 1301-1400 1401-1500 1501-1600 1601-1700 1701-1787			0.135 (2.215%)	0.064	0.159	1-33
19	COL1A2 Description: collagen type I alpha 2 chain GO: 1-36 Reactome: 1-34 UniProtKB: 1-2 STRING: RefEx: COL1A2 Expression Atlas: COL1A2 Single Cell Expression Atlas: COL1A2 scRNASeqDB: COL1A2 PanglaoDB: COL1A2 CMap: COL1A2 MeSH: 1-95 96-190 191-285 286-380 381-475 476-570 571-665 666-760 761-855 856-950 951-1045 1046-1132	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.124 (2.035%)	0.123	0.246	1-63 64-125
20	SPARC Description: secreted protein acidic and cysteine rich GO: 1-44 Reactome: 1-13 UniProtKB: 1-1 STRING: RefEx: SPARC Expression Atlas: SPARC Single Cell Expression Atlas: SPARC scRNASeqDB: SPARC PanglaoDB: SPARC CMap: SPARC MeSH: 1-95 96-190 191-285 286-380 381-475 476-570 571-665 666-760 761-855 856-950 951-1045 1046-1131	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.123 (2.004%)	0.051	0.133	1-73
21	SPARCL1 Description: SPARC like 1 GO: 1-13 Reactome: 1-4 UniProtKB: 1-4 STRING: RefEx: SPARCL1 Expression Atlas: SPARCL1 Single Cell Expression Atlas: SPARCL1 scRNASeqDB: SPARCL1 PanglaoDB: SPARCL1 CMap: SPARCL1 MeSH: 1-93 94-186 187-279 280-369	GPC3 Description: glypican 3 GO: 1-47 Reactome: 1-28 UniProtKB: 1-4 STRING: RefEx: GPC3 Expression Atlas: GPC3 Single Cell Expression Atlas: GPC3 scRNASeqDB: GPC3 PanglaoDB: GPC3 CMap: GPC3 MeSH: 1-93 94-186 187-279 280-372 373-465 466-558 559-651 652-742			0.121 (1.981%)	0	0.001	1-23
22	IGF1 Description: insulin like growth factor 1 GO: 1-82 Reactome: 1-14 UniProtKB: 1-4 STRING: RefEx: IGF1 Expression Atlas: IGF1 Single Cell Expression Atlas: IGF1 scRNASeqDB: IGF1 PanglaoDB: IGF1 CMap: IGF1 MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1274 1275-1372 1373-1470 1471-1568 1569-1666 1667-1764 1765-1862 1863-1960 1961-2058 2059-2156 2157-2254 2255-2352 2353-2450 2451-2548 2549-2646 2647-2744 2745-2842 2843-2940 2941-3038 3039-3136 3137-3226	PDGFRA Description: platelet derived growth factor receptor alpha GO: 1-72 Reactome: 1-18 UniProtKB: 1-1 STRING: RefEx: PDGFRA Expression Atlas: PDGFRA Single Cell Expression Atlas: PDGFRA scRNASeqDB: PDGFRA PanglaoDB: PDGFRA CMap: PDGFRA MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1267			0.118 (1.932%)	0.041	0.116	1-66
23	BGN Description: biglycan GO: 1-21 Reactome: 1-20 UniProtKB: 1-2 STRING: RefEx: BGN Expression Atlas: BGN Single Cell Expression Atlas: BGN scRNASeqDB: BGN PanglaoDB: BGN CMap: BGN MeSH: 1-97 98-194 195-291 292-388 389-485 486-582 583-679 680-773	ENG Description: endoglin GO: 1-59 Reactome: UniProtKB: 1-6 STRING: RefEx: ENG Expression Atlas: ENG Single Cell Expression Atlas: ENG scRNASeqDB: ENG PanglaoDB: ENG CMap: ENG MeSH: 1-100 101-200 201-300 301-400 401-500 501-600 601-700 701-800 801-900 901-1000 1001-1100 1101-1200 1201-1300 1301-1400 1401-1500 1501-1600 1601-1700 1701-1787			0.117 (1.92%)	0.478	0.692	1-35
24	CXCL12 Description: C-X-C motif chemokine ligand 12 GO: 1-53 Reactome: 1-17 UniProtKB: 1-1 STRING: RefEx: CXCL12 Expression Atlas: CXCL12 Single Cell Expression Atlas: CXCL12 scRNASeqDB: CXCL12 PanglaoDB: CXCL12 CMap: CXCL12 MeSH: 1-97 98-194 195-291 292-388 389-485 486-582 583-679 680-776 777-873 874-970 971-1067 1068-1164 1165-1261 1262-1358 1359-1455 1456-1552 1553-1649 1650-1746 1747-1843 1844-1940 1941-2037 2038-2134 2135-2231 2232-2328 2329-2425 2426-2522 2523-2619 2620-2716 2717-2813 2814-2910 2911-3007 3008-3104 3105-3201	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.116 (1.897%)	0.001	0.003	1-87
25	IL7 Description: interleukin 7 GO: 1-27 Reactome: 1-4 UniProtKB: 1-4 STRING: RefEx: IL7 Expression Atlas: IL7 Single Cell Expression Atlas: IL7 scRNASeqDB: IL7 PanglaoDB: IL7 CMap: IL7 MeSH: 1-96 97-192 193-288 289-384 385-480 481-576 577-672 673-768 769-864 865-960 961-1054	PDGFRB Description: platelet derived growth factor receptor beta GO: 1-92 Reactome: 1-18 UniProtKB: 1-2 STRING: RefEx: PDGFRB Expression Atlas: PDGFRB Single Cell Expression Atlas: PDGFRB scRNASeqDB: PDGFRB PanglaoDB: PDGFRB CMap: PDGFRB MeSH: 1-99 100-198 199-297 298-396 397-495 496-594 595-693 694-792 793-891 892-990 991-1089 1090-1188 1189-1287 1288-1375			0.111 (1.82%)	0.359	0.569	1-67
26	COL1A1 Description: collagen type I alpha 1 chain GO: 1-64 Reactome: 1-37 UniProtKB: 1-1 STRING: RefEx: COL1A1 Expression Atlas: COL1A1 Single Cell Expression Atlas: COL1A1 scRNASeqDB: COL1A1 PanglaoDB: COL1A1 CMap: COL1A1 MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1274 1275-1372 1373-1470 1471-1568 1569-1666 1667-1753	ENG Description: endoglin GO: 1-59 Reactome: UniProtKB: 1-6 STRING: RefEx: ENG Expression Atlas: ENG Single Cell Expression Atlas: ENG scRNASeqDB: ENG PanglaoDB: ENG CMap: ENG MeSH: 1-100 101-200 201-300 301-400 401-500 501-600 601-700 701-800 801-900 901-1000 1001-1100 1101-1200 1201-1300 1301-1400 1401-1500 1501-1600 1601-1700 1701-1787			0.109 (1.784%)	0.594	0.818	1-63 64-126
27	IGF1 Description: insulin like growth factor 1 GO: 1-82 Reactome: 1-14 UniProtKB: 1-4 STRING: RefEx: IGF1 Expression Atlas: IGF1 Single Cell Expression Atlas: IGF1 scRNASeqDB: IGF1 PanglaoDB: IGF1 CMap: IGF1 MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1274 1275-1372 1373-1470 1471-1568 1569-1666 1667-1764 1765-1862 1863-1960 1961-2058 2059-2156 2157-2254 2255-2352 2353-2450 2451-2548 2549-2646 2647-2744 2745-2842 2843-2940 2941-3038 3039-3136 3137-3226	EDNRB Description: endothelin receptor type B GO: 1-48 Reactome: 1-7 UniProtKB: 1-3 STRING: RefEx: EDNRB Expression Atlas: EDNRB Single Cell Expression Atlas: EDNRB scRNASeqDB: EDNRB PanglaoDB: EDNRB CMap: EDNRB MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-976			0.106 (1.726%)	0.086	0.195	1-53
28	IGFBP5 Description: insulin like growth factor binding protein 5 GO: 1-40 Reactome: 1-4 UniProtKB: 1-2 STRING: 1 2 RefEx: IGFBP5 Expression Atlas: IGFBP5 Single Cell Expression Atlas: IGFBP5 scRNASeqDB: IGFBP5 PanglaoDB: IGFBP5 CMap: IGFBP5 MeSH: 1-97 98-194 195-291 292-388 389-485 486-582 583-679 680-776	GPC3 Description: glypican 3 GO: 1-47 Reactome: 1-28 UniProtKB: 1-4 STRING: RefEx: GPC3 Expression Atlas: GPC3 Single Cell Expression Atlas: GPC3 scRNASeqDB: GPC3 PanglaoDB: GPC3 CMap: GPC3 MeSH: 1-93 94-186 187-279 280-372 373-465 466-558 559-651 652-742			0.098 (1.598%)	0.057	0.145	1-25
29	BGN Description: biglycan GO: 1-21 Reactome: 1-20 UniProtKB: 1-2 STRING: RefEx: BGN Expression Atlas: BGN Single Cell Expression Atlas: BGN scRNASeqDB: BGN PanglaoDB: BGN CMap: BGN MeSH: 1-97 98-194 195-291 292-388 389-485 486-582 583-679 680-773	GPC3 Description: glypican 3 GO: 1-47 Reactome: 1-28 UniProtKB: 1-4 STRING: RefEx: GPC3 Expression Atlas: GPC3 Single Cell Expression Atlas: GPC3 scRNASeqDB: GPC3 PanglaoDB: GPC3 CMap: GPC3 MeSH: 1-93 94-186 187-279 280-372 373-465 466-558 559-651 652-742			0.097 (1.592%)	0	0.001
30	DCN Description: decorin GO: 1-35 Reactome: 1-21 UniProtKB: 1-3 STRING: RefEx: DCN Expression Atlas: DCN Single Cell Expression Atlas: DCN scRNASeqDB: DCN PanglaoDB: DCN CMap: DCN MeSH: 1-97 98-194 195-291 292-388 389-485 486-582 583-679 680-776 777-873 874-961	GPC3 Description: glypican 3 GO: 1-47 Reactome: 1-28 UniProtKB: 1-4 STRING: RefEx: GPC3 Expression Atlas: GPC3 Single Cell Expression Atlas: GPC3 scRNASeqDB: GPC3 PanglaoDB: GPC3 CMap: GPC3 MeSH: 1-93 94-186 187-279 280-372 373-465 466-558 559-651 652-742			0.095 (1.557%)	0.416	0.623
31	IGF1 Description: insulin like growth factor 1 GO: 1-82 Reactome: 1-14 UniProtKB: 1-4 STRING: RefEx: IGF1 Expression Atlas: IGF1 Single Cell Expression Atlas: IGF1 scRNASeqDB: IGF1 PanglaoDB: IGF1 CMap: IGF1 MeSH: 1-98 99-196 197-294 295-392 393-490 491-588 589-686 687-784 785-882 883-980 981-1078 1079-1176 1177-1274 1275-1372 1373-1470 1471-1568 1569-1666 1667-1764 1765-1862 1863-1960 1961-2058 2059-2156 2157-2254 2255-2352 2353-2450 2451-2548 2549-2646 2647-2744 2745-2842 2843-2940 2941-3038 3039-3136 3137-3226	NTRK2 Description: neurotrophic receptor tyrosine kinase 2 GO: 1-67 Reactome: 1-17 UniProtKB: 1-4 STRING: RefEx: NTRK2 Expression Atlas: NTRK2 Single Cell Expression Atlas: NTRK2 scRNASeqDB: NTRK2 PanglaoDB: NTRK2 CMap: NTRK2 MeSH: 1-94 95-188 189-282 283-376 377-470 471-564 565-658 659-752 753-846 847-940 941-1034 1035-1127			0.093 (1.527%)	0	0.001	1-43

(2,2,) -related Enrichment Analysis

load("reanalysis.RData")
library("plotly")

GO-Enrichment Analysis (BP : Biological Process)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$GO_BP$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$GO_BP$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="GO-Enrichment Analysis (BP)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

## Warning: textfont.color doesn't (yet) support data arrays

## Warning: textfont.color doesn't (yet) support data arrays

GO-Enrichment Analysis (MF : Molecular Function)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$GO_MF$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$GO_MF$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="GO-Enrichment Analysis (MF)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

## Warning: textfont.color doesn't (yet) support data arrays

## Warning: textfont.color doesn't (yet) support data arrays

GO-Enrichment Analysis (CC : Cellular Component)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$GO_CC$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$GO_CC$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="GO-Enrichment Analysis (CC)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

## Warning: textfont.color doesn't (yet) support data arrays

## Warning: textfont.color doesn't (yet) support data arrays

MeSH-Enrichment Analysis (A : Anatomy)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_A$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_A$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (A)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (B : Organisms)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_B$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_B$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (B)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (C : Diseases)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_C$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_C$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (C)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (D : Drugs)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_D$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_D$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (D)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (E : Analytical, Diagnostic and Therapeutic Techniques and Equipment)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_E$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_E$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (E)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (F : Psychiatry and Psychology)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_F$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_F$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (F)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (G : Phenomena and Processes)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_G$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_G$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (G)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (H : Disciplines and Occupations)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_H$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_H$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (H)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (I : Anthropology, Education, Sociology and Social Phenomena)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_I$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_I$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (I)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (J : Technology and Food and Beverages)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_J$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_J$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (J)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (K : Humanities)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_K$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_K$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (K)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (L : Information Science)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_L$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_L$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (L)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (M : Persons)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_M$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_M$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (M)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (N : Health Care)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_N$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_N$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (N)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (V : Publication Type)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_V$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_V$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (V)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

MeSH-Enrichment Analysis (Z : Geographical Locations)

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$MeSH_Z$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$MeSH_Z$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="MeSH-Enrichment Analysis (Z)",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

Reactome Pathway-Enrichment Analysis

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$Reactome$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$Reactome$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="Reactome-Enrichment Analysis",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

DO-Enrichment Analysis

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$DO$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$DO$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="DO-Enrichment Analysis",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

NCG-Enrichment Analysis

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$NCG$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$NCG$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="NCG-Enrichment Analysis",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))

DGN-Enrichment Analysis

negLogPval <- -log10(out.vecLR[['pattern_2_2']]$Enrich$DGN$Pvalue + 1E-10)
term <- out.vecLR[['pattern_2_2']]$Enrich$DGN$Term
target <- seq_len(min(100, length(negLogPval)))
negLogPval <- negLogPval[target]
term <- term[target]
p <- plot_ly(x=seq_along(negLogPval), y=~negLogPval,
type="bar", color=~negLogPval, text=term,
colors=c("#4b61ba", "gray", "#a87963", "red"))
layout(p, title="DGN-Enrichment Analysis",
   xaxis=list(title="Term"),
   yaxis=list(title="-Log(P-value)"),
   legend=list(name=""))